PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G19180.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 509aa MW: 56159.1 Da PI: 5.997

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G19180.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.2e-11	199	228	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ ONIVA05G19180.3 199 AKTERRLAQNREAARKSRLRKKAYVQQLET 228 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	196	272	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	198	242	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	199	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-6	200	243	No hit	No description
CDD	cd14708	1.81E-20	200	252	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-7	200	229	No hit	No description
PROSITE pattern	PS00036	0	203	218	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-29	281	355	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MKGEGSSWRM ANDHDRAVPH SQAVAYGIQG HAVLAAPPAN FLELQPAAAA YFGELEKALI 60 HGTSAGAGVD HGMIQSDAYT ESAGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS 120 SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG 180 GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL 240 QRARSQGLFP GGCSAPGDMS SGAVMFDMEY TRWIDDDSKC MAELQGALQA QLPDGNLGAI 300 VEECMRHYDE LFHLRAVLAS SDVFHLMTGM WAAPAERCFL WMAGFRPSEI LKMLIPQLDP 360 LTEQQLMGMC SLQQSSEQTE EALAQGLHQL HQSLADAVGG GPLNDGADVA NYTGLMALAL 420 GRLENLESFY RQADNLRQET LHHMRRILTT RQTARCFLSI GEYNRRLRAL SSLWASRPRE 480 NFIATENVSP TGTEFQVIQQ SQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MKGEGSSWRM ANDHDRAVPH SQAVAYGIQG HAVLAAPPAN FLELQPAAAA YFGELEKALI  60
HGTSAGAGVD HGMIQSDAYT ESAGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS  120
SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG  180
GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL  240
QRARSQGLFP GGCSAPGDMS SGAVMFDMEY TRWIDDDSKC MAELQGALQA QLPDGNLGAI  300
VEECMRHYDE LFHLRAVLAS SDVFHLMTGM WAAPAERCFL WMAGFRPSEI LKMLIPQLDP  360
LTEQQLMGMC SLQQSSEQTE EALAQGLHQL HQSLADAVGG GPLNDGADVA NYTGLMALAL  420
GRLENLESFY RQADNLRQET LHHMRRILTT RQTARCFLSI GEYNRRLRAL SSLWASRPRE  480
NFIATENVSP TGTEFQVIQQ SQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639063.2	0.0	transcription factor TGAL5 isoform X7
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0E0HF73	0.0	A0A0E0HF73_ORYNI; Uncharacterized protein
STRING	ORGLA05G0158500.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-138	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]