PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G19180.6

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 437aa MW: 48754.8 Da PI: 5.8306

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G19180.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	6e-11	127	156	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ ONIVA05G19180.6 127 AKTERRLAQNREAARKSRLRKKAYVQQLET 156 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	124	200	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	126	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.1E-8	127	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	128	171	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.3E-7	128	157	No hit	No description
PROSITE pattern	PS00036	0	131	146	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-29	209	283	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MIQSDAYTES AGYLAARPPT LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL 60 VSPASMRSDS GQEQQQQEVL MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK 120 DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQGLFPGG 180 CSAPGDMSSG AVMFDMEYTR WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF 240 HLRAVLASSD VFHLMTGMWA APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL 300 QQSSEQTEEA LAQGLHQLHQ SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ 360 ADNLRQETLH HMRRILTTRQ TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG 420 TEFQVIQQSQ QNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MIQSDAYTES AGYLAARPPT LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL  60
VSPASMRSDS GQEQQQQEVL MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK  120
DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQGLFPGG  180
CSAPGDMSSG AVMFDMEYTR WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF  240
HLRAVLASSD VFHLMTGMWA APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL  300
QQSSEQTEEA LAQGLHQLHQ SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ  360
ADNLRQETLH HMRRILTTRQ TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG  420
TEFQVIQQSQ QNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881194.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D3G886	0.0	A0A0D3G886_9ORYZ; Uncharacterized protein
STRING	OBART05G18270.2	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-137	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]