PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G19180.7
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 514aa    MW: 57009.2 Da    PI: 6.6163
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G19180.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.98e-12199246448
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 
                       k err+++NReAAr+sR+RKka++++Le+   + +++e+e ++ +++
  ONIVA05G19180.7 199 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 246
                      699*************************97222444555544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-7196263IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381198242IPR004827Basic-leucine zipper domain
PfamPF001705.9E-9199252IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-8200246No hitNo description
SuperFamilySSF579593.38E-7200246No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF141444.9E-29286360IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MKGEGSSWRM ANDHDRAVPH SQAVAYGIQG HAVLAAPPAN FLELQPAAAA YFGELEKALI  60
HGTSAGAGVD HGMIQSDAYT ESAGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS  120
SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG  180
GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL  240
QRARSQVPTL RKPHKIATSN NTILTKGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG  300
NLGAIVEECM RHYDELFHLR AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI  360
PQLDPLTEQQ LMGMCSLQQS SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL  420
MALALGRLEN LESFYRQADN LRQETLHHMR RILTTRQTAR CFLSIGEYNR RLRALSSLWA  480
SRPRENFIAT ENVSPTGTEF QVIQQSQQNQ FSGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639063.20.0transcription factor TGAL5 isoform X7
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A0E0HF770.0A0A0E0HF77_ORYNI; Uncharacterized protein
STRINGONIVA05G19180.50.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-127bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]