PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G20210.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 206aa    MW: 21673.5 Da    PI: 9.8152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G20210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F++   L  H  +H
  ONIVA05G20210.1 41 FECRTCGRRFPTFQALGDHRASH 63
                     89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-73963No hitNo description
PfamPF139125.2E-104065IPR007087Zinc finger, C2H2
SMARTSM003550.0694163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7624168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-7115142No hitNo description
PfamPF139126.8E-9119144IPR007087Zinc finger, C2H2
SMARTSM003551.3120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSKRQFGEMD GGIDTARVLM LLSRRRQQHG DVGHARAARV FECRTCGRRF PTFQALGDHR  60
ASHKRPRHGA ERAPRPAGDD DVGAGAGAAL RLVGAASSLS TDEARAGGGG RRTRGAGAAH  120
GCPVCGLEFA VGQALGGHMR RHRAAAGDVA APRVKTDDVV VGDECTGGIC LDLNLTPSEN  180
CDKCRHAQLG VAVNSVQRTI LLDRPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881071.11e-142zinc finger protein ZAT12
TrEMBLA0A0E0HFL41e-143A0A0E0HFL4_ORYNI; Uncharacterized protein
STRINGONIVA05G20210.11e-143(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-21C2H2 family protein