PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G20370.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 91aa MW: 10893.8 Da PI: 8.4769

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G20370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	84	1.8e-26	15	62	49	96
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 asdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre+e++ ONIVA05G20370.1 15 RASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEEA 62 69*******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-22	15	72	IPR009072	Histone-fold
Pfam	PF00808	8.1E-5	15	37	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.49E-17	15	62	IPR009072	Histone-fold
PRINTS	PR00615	1.6E-12	20	38	No hit	No description
PRINTS	PR00615	1.6E-12	39	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MRCDWVFVVV GQHYRASDKC QREKRKTING DDLLWAMATL GFEDYIEPLK VYLQKYREME 60 EAVQVPKGWA NKQHTIKEWV ICNLRIFLLA M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-18	16	58	51	93	NF-YB
4awl_B	2e-18	16	58	52	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-18	16	58	52	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC108500	4e-92	AC108500.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1280_A04, complete sequence.
GenBank	AP014961	4e-92	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	4e-92	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620314.1	2e-26	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
Refseq	XP_016449855.1	2e-26	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
Refseq	XP_019238388.1	3e-26	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
Refseq	XP_020252655.1	2e-26	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-like
TrEMBL	A0A0E0HFN7	3e-62	A0A0E0HFN7_ORYNI; Uncharacterized protein
STRING	ONIVA05G20370.1	5e-63	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25630	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-28	nuclear factor Y, subunit B3