 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ONIVA06G00010.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LSD |
| Protein Properties |
Length: 217aa MW: 24087.4 Da PI: 8.1257 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA06G00010.3 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 25.2 | 2.7e-08 | 26 | 46 | 1 | 21 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21
C+gC +lL+YP+GA sV+C++
ONIVA06G00010.3 26 CSGCCNLLMYPAGAMSVCCTV 46
*******************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MPVPLALYPT PVPFAPPNGA QSQLVCSGCC NLLMYPAGAM SVCCTVRSTV TAVPAPDMHI 60
IHSGIRNSTR VAMIVPAVRP LAKYTLELCV STPPPVAAAA MECVLDEYAT KHRISIDRFL 120
QLRIFVKVHD RFNASRIFLY MYSCSMKMLS FGVPCKEKAE YECNRLPAMI DAHLFRDYHL 180
AFWFGLFCAW GQPQDGDLHL WLPHQCRCHL GGASGLP
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005621 | 3e-73 | AP005621.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence. |
| GenBank | AP006751 | 3e-73 | AP006751.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1460A05. |
| GenBank | AP014962 | 3e-73 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
