PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00530.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24406.9 Da    PI: 10.472
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-281968251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  ONIVA06G00530.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68
                     8*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.0951070IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-241232IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-311269IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-271390IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251966IPR002100Transcription factor, MADS-box
CDDcd002653.81E-332079No hitNo description
PRINTSPR004041.4E-243247IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-244768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR  60
GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTVKNM KSQSETLAME IDTVEAYTRA  120
KTWNMLVART AWPGDADGEE PKQHPFTKGK QMQKKLMDKI SQLQQQEKIL SEENALLLDQ  180
GKVQHAPIGA PAREMNQNQH VQDIDVDTEL VIGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410550.0AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642540.11e-112MADS-box transcription factor 50-like isoform X1
RefseqXP_015642541.11e-112MADS-box transcription factor 50-like isoform X1
TrEMBLA0A0E0HJQ91e-158A0A0E0HJQ9_ORYNI; Uncharacterized protein
STRINGONIVA06G00530.11e-159(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174341010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-29AGAMOUS-like 20