PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 516aa    MW: 56301.1 Da    PI: 7.4638
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-083053421954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  ONIVA06G00550.1 305 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 342
                      554459******************************88 PP
2BELL60.53.9e-20170229472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +l+++ka++ls++ee++         +++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  ONIVA06G00550.1 170 DLERRKARILSMVEEIK---------MRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 229
                      68899999999999996.........89**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-56101227IPR006563POX domain
PfamPF075267.0E-27107225IPR006563POX domain
PROSITE profilePS5007111.564283346IPR001356Homeobox domain
CDDcd000865.13E-12286347No hitNo description
SMARTSM003896.5E-9286350IPR001356Homeobox domain
SuperFamilySSF466895.99E-17287353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27289352IPR009057Homeodomain-like
PfamPF059202.4E-17303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAADHH HHHLRGGGGG  60
LQLPSPWSQQ QVSLSLYNNA AGAAGSPPSS LVAHQQLAAA QPLMFQLRGS KYLGPVKALL  120
AEFCSLDVEA MDGAKQQRPP NPNPKIGKWD DVEGSGSWGN LSLSSMDLLD LERRKARILS  180
MVEEIKMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR ALRNAMGESQ  240
RDAAGGVAAA APGATKGDTP RLRVLDQCLR QQRAFQQSGA VDSFPWRPQR GLPERAVAVL  300
RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED MYKEETKPES  360
SDGNNKLNPS AAGNKQQHRD DPKKNYTATT AEASLVQQSS YHLHLRSSGN PNSSSLMIPA  420
AASTSIDHHH DSSHQLLGGH SYSSAAGLHH GHGGAVSLTL GLQQQQQPFA ASMMHQHQQQ  480
QQQSFMVEAA EEEEDDVLPY RNLMESQLLH DFAGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15292349562Homeobox protein Meis2
3k2a_B4e-15292349562Homeobox protein Meis2
4xrs_A3e-15292349158Homeobox protein Meis1
4xrs_B3e-15292349158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLA0A0E0HJR20.0A0A0E0HJR2_ORYNI; Uncharacterized protein
STRINGONIVA06G00550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-85TALE family protein