PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 260aa    MW: 28613.1 Da    PI: 10.787
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32175228255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  ONIVA06G00780.1 175 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 228
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.6E-16172229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29173228IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-24175229IPR006447Myb domain, plants
PfamPF002491.4E-7176227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSKKLDLSLH ISTPSCFSPS PAAASTTASS WPWTTKQQLP EEEEAAATTS TTTSSRSAPP  60
LLLCNSDVFS TRGSSTTNTN HHADGGLANS QQLKAAARQP IHGIPVYHGH QQQQRRQLHH  120
PYDVVGTRQS DGGRRLFSHH VGVGVTPSRT LSSSSSSPAR LLPRLPPGRR SVRAPRMRWT  180
TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTIK NTDRPVSNAE  240
YKTERGLRDI YVEVTRSAEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17176228456Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656560.17e-55PREDICTED: probable transcription factor KAN2
TrEMBLA0A0E0HJU10.0A0A0E0HJU1_ORYNI; Uncharacterized protein
STRINGONIVA06G00780.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-36G2-like family protein