PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G01110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 102aa    MW: 11555.1 Da    PI: 4.427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G01110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.95.2e-1614991189
              NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
                     +eel+++yL++k++g + ++e vi+ +diy+v+P +L +       +  +e + w++ ++r++++ +g r++ +t sg Wka g+ 
  ONIVA06G01110.1 14 EEELICFYLRNKLDGLRDDIECVIPVFDIYSVDPLQLSEihhemlgSGGEEGEPWFYLCPRQEREVRGGRPSWTTPSGSWKAVGTP 99
                     89***************999888**************854565443222355699***************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.5544102IPR003441NAC domain
PfamPF023652.3E-61495IPR003441NAC domain
SuperFamilySSF1019411.57E-1714101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MQTGRITPLD PIHEEELICF YLRNKLDGLR DDIECVIPVF DIYSVDPLQL SEIHHEMLGS  60
GGEEGEPWFY LCPRQEREVR GGRPSWTTPS GSWKAVGTPG VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-118AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632691.16e-46NAC domain-containing protein 90 isoform X2
SwissprotQ9FMR31e-22NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0HJY94e-69A0A0E0HJY9_ORYNI; Uncharacterized protein
STRINGONIVA06G01110.17e-70(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-25NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]