PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G02390.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 334aa    MW: 35602.4 Da    PI: 10.6378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G02390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-14102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  ONIVA06G02390.1 102 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 146
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43195151IPR017930Myb domain
SuperFamilySSF466891.0E-1796151IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1898150IPR006447Myb domain, plants
SMARTSM007173.5E-1199149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-12102145IPR009057Homeodomain-like
PfamPF002494.7E-12102146IPR001005SANT/Myb domain
CDDcd001677.33E-10102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPQDSRPAAM RLFGVTISPP PPPAEPDPSD RRDPSPRPAR EDAMRKCKSM GNLAAAAASS  60
AAAGGGGAGD AGGSGDGYLS DGGLLQSSGK RRRAQERKKA VPWTEEEHRT FLAGLEKLGK  120
GDWRGISKNF VTTRTPTQVA SHAQKYFLRQ TNPNKKKRRS SLFDMMATDM SPAPNCPVLP  180
PSMGKLHDMV TMTKQLQNSS LEGVSSSSTV NLAPQVARDL PPPIPSFKAT NVDSSLSKMN  240
HMDGFFRAPM LFRPIPRIAE GASSSTPATA SIADLEFQAN LTACSNALFA SPRRKPKKAD  300
PPAEKDLDLT VTPPSQQTRA SISSQNAVGV IQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420170.0AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A0E0HKF50.0A0A0E0HKF5_ORYNI; Uncharacterized protein
STRINGONIVA06G02390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein