PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G03230.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 257aa    MW: 27091.8 Da    PI: 9.0308
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G03230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1994148256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ONIVA06G03230.1  94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 148
                      788899***********************************************98 PP
2HD-ZIP_I/II125.23e-4094184192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk
  ONIVA06G03230.1  94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 184
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1977151IPR009057Homeodomain-like
PROSITE profilePS5007116.66590150IPR001356Homeobox domain
SMARTSM003892.8E-1792154IPR001356Homeobox domain
CDDcd000865.21E-1694151No hitNo description
PfamPF000466.8E-1794148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1899148IPR009057Homeodomain-like
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021835.1E-11150184IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-19150193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAAAAA EDERFACSPG  60
SPVSSGSGKR GSGSGSGSGD EVDDAGCDVG GGARKKLRLS KDQAAVLEEC FKTHHTLTPK  120
QKVALAKSLN LRPRQVEVWF QNRRARTKLK QTEVDCEHLK RWCDQLADDN RRLHKELAEL  180
RALKATPTPP AAAPPLTTLT MCLSCKRVAN AGVPSPAAAM FPGHPQFLCG FRDHAGAASS  240
SYGGASSGLA KAVRAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308960.0CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642539.11e-128homeobox-leucine zipper protein HOX28
SwissprotA2Y9311e-129HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-129HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A0E0HKR70.0A0A0E0HKR7_ORYNI; Uncharacterized protein
STRINGONIVA06G03230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-45homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]