PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G04040.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 711aa MW: 74137 Da PI: 5.9533

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G04040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	265.4	2e-81	354	710	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L ++A+a + g+ a+++Larl+++ p g+p+ R a+y++ AL la+ + +++ ts+ +++ +l+a+k fs++sP+l+f+++ ONIVA06G04040.1 354 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFANF 442 7899***********************************************.....6666777888888******************* PP GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 t qa+l+++++ +++ +iDfd++ G+QW+++lq+La R + p+l++T+++s++s++ el+ t+++L++fA+ lg+pfefn++ ONIVA06G04040.1 443 TVTQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI--- 533 ****999887799********************96544459*************************************9... PP GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +l+++++ eL + +E++aV+l + + +++L+lvk+l Pk+vv ++ +d+++ +F ++fl++l+ + l++sl+a ++ ONIVA06G04040.1 534 NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLCLLESLDAA-GT 618 999999999966557******877776........5677*****************************************999.89 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++++ +k+Er+l++++++++v + ++ ++ Wr l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W++ +LvsvS ONIVA06G04040.1 619 DADAVSKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVS 707 99***************977665.....88899***************************************************** PP GRAS 372 aWr 374 aWr ONIVA06G04040.1 708 AWR 710 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.957	326	690	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-79	354	710	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MRAAPFSADG NGAAELAGSI AALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST 60 STLSSSHGSG AADSISTGVA AVSESSAAAA EATRWAAPGE HGGGGGGELP PIPGALDVGF 120 VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH 180 PGGVSSPAAL ASDLSSSGRR SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD 240 MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH 300 NQPQPPPPAP AQCLPFPTLH STVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA 360 KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL LLALADGHHA ATRLTSPLDV 420 ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL 480 AHRCGSGGVS LPMLKLTAFV SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP 540 MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL 600 NCLQSCLCLL ESLDAAGTDA DAVSKIERFL IQPRVEDAVL GRRRADKAIA WRTVLTSAGF 660 APQPLSNLAE AQADCLLKRV QVRGFHVEKR GAGLALYWQR GELVSVSAWR C

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MRAAPFSADG NGAAELAGSI AALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHGSG AADSISTGVA AVSESSAAAA EATRWAAPGE HGGGGGGELP PIPGALDVGF  120
VAEESWDAML GDAAAAAGQE QTFLNWIMAA PGDMEPQAPG LSQQQLLANA AGFGFPLQHH  180
PGGVSSPAAL ASDLSSSGRR SLTSSSGSNS KATSAFGLLS PEAALQPPPA TTAPFHNGAD  240
MKPPLLGLPS PTLLLNQHQP TPASTLFMPF PSFSDHQQQP LLQPPPKRHH SVPDNLFLLH  300
NQPQPPPPAP AQCLPFPTLH STVPFQLQPS MQHPRNAMKS TAAAAAAQQQ HLLDELAAAA  360
KATEVGNSIG AREILARLNQ QLPPIGKPFL RSASYLKDAL LLALADGHHA ATRLTSPLDV  420
ALKLTAYKSF SDLSPVLQFA NFTVTQALLD EIASTTASCI RVIDFDLGVG GQWASFLQEL  480
AHRCGSGGVS LPMLKLTAFV SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAINLDAFDP  540
MELIAPTADE VVAVSLPVGC SARTPLPAML QLVKQLAPKI VVAIDYGSDR SDLPFSQHFL  600
NCLQSCLCLL ESLDAAGTDA DAVSKIERFL IQPRVEDAVL GRRRADKAIA WRTVLTSAGF  660
APQPLSNLAE AQADCLLKRV QVRGFHVEKR GAGLALYWQR GELVSVSAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-28	352	710	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637143.1	0.0	scarecrow-like protein 27
TrEMBL	A0A0E0HL18	0.0	A0A0E0HL18_ORYNI; Uncharacterized protein
STRING	ONIVA06G04040.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	7e-83	GRAS family protein