PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G04550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 214aa    MW: 23243.5 Da    PI: 11.778
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G04550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP39.61.9e-12331191698
              TCP  16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 
                      g R RR    Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a  a   l   +  +a +   ++s + s+++ + +ka  +a ++k
  ONIVA06G04550.1  33 GVRARRtstARLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGRPSEEQARTRKATVAASPRK 119
                      6677773335*********************************99999998886666633333333333333222221111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.4051982IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-93275IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEEVVVGKEC KRPRCALVGV GGHGSDVADE PGGVRARRTS TARLSVPTSI AFYDIQDRLG  60
VNRPSKSIEW LICAALVARL LLRPPQRRPA PHPRRPSSGR PSEEQARTRK ATVAASPRKS  120
GEKRRKTRSG CAAWKAERIT KLRVWREGWM PRREASTSAA SAGQSWIRKL STPGSGDSCS  180
CSDAKPAKRR WAEKAGEVVA REAGGAERGG GGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619107.11e-30transcription factor PCF8-like
TrEMBLA0A0E0HL851e-146A0A0E0HL85_ORYNI; Uncharacterized protein
STRINGONIVA06G04550.11e-147(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1996588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.17e-11TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3