PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G04560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 397aa    MW: 42744.2 Da    PI: 4.9318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G04560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15313364155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  ONIVA06G04560.1 313 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 364
                      57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.378209278IPR001471AP2/ERF domain
SMARTSM003802.2E-4218284IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-8245280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-8247279IPR001471AP2/ERF domain
PfamPF008471.9E-9313364IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17313374IPR016177DNA-binding domain
CDDcd000181.31E-23313372No hitNo description
Gene3DG3DSA:3.30.730.104.3E-19314373IPR001471AP2/ERF domain
SMARTSM003804.1E-28314378IPR001471AP2/ERF domain
PROSITE profilePS5103218.571314372IPR001471AP2/ERF domain
PRINTSPR003672.0E-5315326IPR001471AP2/ERF domain
PRINTSPR003672.0E-5354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MESSLKEEKA AGESGDDEKA ERSSPINLNS LPATAACAAA APDEDGLHSA VESGAKDSNT  60
SKGVESLGTG HKKIPKREVV DEVDVQTCAE GKNDSVVPSS SKNPINDKNA KANVAENGQS  120
ADGIPEDQRV TILSVVKKDE PADDVRDSVN PVTVVGYRDE KGGTSGTAGT TAVRPAGTRS  180
SSFHGVTSQI IPVLSLEGGT HQSSTDSAGI DGVENMKLIC GTVRAEWKGG EEREGKGLFF  240
SLNISYYAGS YDTEEKAARS YDVAALKYWG QNTKLNFSVS EYERELEDIR DMSREECVTY  300
LRRRSSCFSR GASIYRGVTR RQKDGRWQAR IGLVAGTRDI YLGTFKTEEE AAEAYDIAAI  360
EIRGKNAVTN FDRSNYMEKG MHCIEGAGLK LLASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301322RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0E0HL860.0A0A0E0HL86_ORYNI; Uncharacterized protein
TrEMBLA2X9L60.0A2X9L6_ORYSI; Uncharacterized protein
STRINGONIVA06G04560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-48AP2 family protein