PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G05580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 496aa    MW: 54404 Da    PI: 8.6065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G05580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.6e-1555105355
              AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVrw+   grWv+ +r+p   g +  rf++g+ +taee a+ ++aa+++l g
  ONIVA06G05580.1  55 FRGVRWRGCAGRWVCKVRVP---GsRGDRFWIGTSDTAEETARTHDAAMLALCG 105
                      8******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-2154115IPR001471AP2/ERF domain
PfamPF008472.4E-1054105IPR001471AP2/ERF domain
PROSITE profilePS5103216.88454113IPR001471AP2/ERF domain
SMARTSM003803.3E-1254119IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1354115IPR016177DNA-binding domain
CDDcd000183.93E-2055115No hitNo description
Gene3DG3DSA:3.40.50.1501.4E-85267494IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5168275.68271495IPR002935O-methyltransferase, family 3
SuperFamilySSF533351.39E-44274494IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF015964.2E-100284494IPR002935O-methyltransferase, family 3
CDDcd024402.84E-4334435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009805Biological Processcoumarin biosynthetic process
GO:0032259Biological Processmethylation
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042409Molecular Functioncaffeoyl-CoA O-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MILVELLLSS YVAHVMEKNT AASGQLMTSS AEATPSSLKR PAGRTKFQET RHLVFRGVRW  60
RGCAGRWVCK VRVPGSRGDR FWIGTSDTAE ETARTHDAAM LALCGASASL NFADSAWLLH  120
VPRAPVVSGL RPLAARCATR CLQGHRRVPA PGRGSTATAT ATSGDAASTA PPSAPVLSAK  180
QCEFIFLSSL DFHMLFSHSS AALYKPREAS LPRRRSQSGD PRRARDRSKL LHRSHDMAEA  240
ASAAAAATTE QANGSSGGEQ KTRHSEVGHK SLLKSDDLYQ YILETSVYPR EHECMKELRE  300
VTANHPWNLM TTSADEGQFL NLLLKLIGAK KTMEIGVYTG YSLLATALAI PDDGTILAMD  360
INRENYELGL PSIEKAGVAH KIDFREGPAL PVLDQLVEEE GNHGSFDFVF VDADKDNYLN  420
YHERLMKLVK VGGLVGYDNT LWNGSVVLPA DAPMRKYIRY YRDFVLELNK ALAADHRVEI  480
CQLPVGDGIT LCRRVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5kva_A1e-15525349635278caffeoyl-CoA O-methyltransferase
5kva_B1e-15525349635278caffeoyl-CoA O-methyltransferase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMethylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0657440.0AK065744.1 Oryza sativa Japonica Group cDNA clone:J013039L12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643224.10.0caffeoyl-CoA O-methyltransferase 1
SwissprotQ9XGD51e-160CAMT2_MAIZE; Caffeoyl-CoA O-methyltransferase 2
TrEMBLA0A0E0HLM20.0A0A0E0HLM2_ORYNI; Uncharacterized protein
STRINGONIVA06G05580.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-27dehydration response element B1A