PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G06040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 424aa    MW: 45036.9 Da    PI: 5.5608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G06040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09375422347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  ONIVA06G06040.1 375 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 422
                      68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-12368424IPR009057Homeodomain-like
PROSITE profilePS5129414.122368424IPR017930Myb domain
SuperFamilySSF466895.15E-13370423IPR009057Homeodomain-like
CDDcd116601.47E-16374424No hitNo description
PfamPF002491.4E-7375422IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPRLMPEDAS LLLDHVVGDP SVPAAAANAA LAALPFPSRP TPRLLRASLL RRLAADPVSA  60
AALDSLQLLA SLPSSPSPAA PAAAAAAHLA VAAYLAVSAP DFDAAAGALF GRPGGRARRA  120
VEEGGAAALA SDEADAVADQ FEAAVGNSFS QTVLRGLWGD RAAAEERVRE LLAVEWAAIG  180
QSRLEMAAER IVGDGAIETW RAADEVTRAK YRLLAGEQRA REIEGKLGET IPQGNQISTP  240
EVHKVMDALK SSCANLHSVV EDPLPAAKAA ADEVLAARMD KAVDLNAGEV SNQPTACDIA  300
GPSAPADNLD APRKGTAASL MDWNPTARTF QWEDSPDPDG SCSPIHRPQL PSPRRTTFSP  360
LQPADNKAKR RKARKWCALE EETLRKGVEQ YGNGNWKDIL TNNPDVFIGR KAMDLKDKWR  420
NMMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641699.10.0uncharacterized protein LOC4340310
TrEMBLA0A0E0HLR90.0A0A0E0HLR9_ORYNI; Uncharacterized protein
STRINGONIVA06G06040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.18e-12TRF-like 5