PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G06770.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 183aa    MW: 19950 Da    PI: 12.2236
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G06770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.7e-095287944
                     CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                     r+ +NRe+Arr R RK+  ++ L+  v+ L   N  
  ONIVA06G06770.1 52 RMLSNRESARRLRMRKQRHLDDLTAQVAHLRRDNAH 87
                     89*****************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-735108IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-852120No hitNo description
PfamPF001701.4E-75288IPR004827Basic-leucine zipper domain
CDDcd147022.31E-155297No hitNo description
SuperFamilySSF579594.78E-95298No hitNo description
PROSITE patternPS0003605266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRGRRDVGG RRGKRRRAVA RRIPFPSSLS LSLSLGAQGR EVGGGASGGG GRMLSNRESA  60
RRLRMRKQRH LDDLTAQVAH LRRDNAHVTT ALGLTTQGLL AVDAENAVLR TQAAELAARL  120
ASLNDILSSP CLTAEAAMAE TNNKKKKIYL PLGVILAFRK NTRHFQPGNN KIMHSVPVNF  180
TYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16067RRLRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HM061e-128A0A0E0HM06_ORYNI; Uncharacterized protein
STRINGONIVA06G06770.11e-129(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.18e-22G-box binding factor 6