PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09330.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 400aa    MW: 40134.3 Da    PI: 9.8127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.42e-41662462137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  ONIVA06G09330.1  66 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 159
                      789******************************************************************9999899999999988888999999 PP

              TCP  89 ..................................kaaksaa.kskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                        +  +s++ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  ONIVA06G09330.1 160 glagprfgggaraadawdrvvglgfggaadapssA-TSSSTsPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 246
                      99999999999999***********9999999853.3333336666666666667777744422333333566668888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4470246IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67572126IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAQGELQVRT  60
KAAAPPPKRT STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE  120
PAVIAATGTG TIPANFTSLN ISLRSSGSSL SIPSHLRLAG LAGPRFGGGA RAADAWDRVV  180
GLGFGGAADA PSSATSSSTS PLLLSFHSGS VGLDVSPPSA STSPAAADLS RKRRWEQEMQ  240
QQQQYQQQMA GYTQSQIPAG TVWMVPSSNA QAAGGGAPPG GGGESIWTFP QSGSGGGGGA  300
ATVYRGVPSG LHFMNFPATP MALLPGGQQL GLAGAGGGGE GHPGILAALN AYRAQAAQPD  360
AGAAAQNGAQ GSSQHRQHQH HGGGGGGGDE RHESMSASDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641757.11e-163transcription factor TCP15
TrEMBLA0A0E0HMY70.0A0A0E0HMY7_ORYNI; Uncharacterized protein
STRINGONIVA06G09330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-45TCP family protein