PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G11770.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 552aa    MW: 60220.6 Da    PI: 9.4584
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G11770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10260299443
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                       k +rr+++NReAAr+sR RKka+i++Le    +L    +
  ONIVA06G11770.1 260 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQ 299
                      589**************************97777765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-7257356IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588259303IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-8261305No hitNo description
SuperFamilySSF579592.32E-7261304No hitNo description
PfamPF001702.3E-7261301IPR004827Basic-leucine zipper domain
CDDcd147083.48E-20261313No hitNo description
PROSITE patternPS000360264279IPR004827Basic-leucine zipper domain
PfamPF141442.0E-31346422IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MKMNHQKTCT GCRVPYSTIH NAQFKRGCKR TLLSLSPLFF IFVVVVVVVV LAACSRCCRR  60
RRRRCTTIRH TAEEQQLGGI GTAGYHIGDG AIFPPHHLLP PPDLPLLRTS PNPSSKSSSN  120
LTAGGHLPPL AVAAAAAAQQ HGVAVVGMAA HQGMAAATAA DRFCLPRMAA AAAAASQVEN  180
WGDSGVVVSS PFTDDTSTDL DDSADKHHLH ALVVPLPPAT SSRRRLSWLA PLGGGDGGDD  240
AGEQRGADSS AVSKERRGDQ KMQRRLAQNR EAARKSRMRK KAYIQQLESS RSKLMHLEQE  300
LQRARQQGIF IATGGSGDHG HSIGGNGGTL AFDLEYARWL DEHQRHINDL RVALNAQMSD  360
DELRELVDAV MMHYDQVFRL KSFATKSDVF HVLSGMWMSP AERFFMWLGG FRSSELLKVL  420
ASHLEPLTDQ QLMGICNLQQ SSQQAEDALS QGMEALQQTL GDTLVSAAAT VVGGGGGADN  480
VTNYMGQMAI AMAKLTTLEN FLRQADLLRH QTLQQMHRIL TTRQAARALL VISDYFSRLR  540
ALSSLWLARP RD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563RCCRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642107.10.0transcription factor TGAL3-like isoform X1
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0E0HNR70.0A0A0E0HNR7_ORYNI; Uncharacterized protein
STRINGONIVA06G11770.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-118bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]