PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G16260.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 214aa    MW: 22092.8 Da    PI: 6.4241
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G16260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer49.11.4e-1561111453
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 
                      ++Y+eC kNhAaslGgh     +   +  g e +++++l CaACgCH nFH
  ONIVA06G16260.1  61 TVYQECPKNHAASLGGHGAGRLRGVHAVVGGEpADPTSLMCAACGCHCNFH 111
                      78****************999999999888888****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.8E-1261111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-861111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.62563114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKLSTFATAA AAAADRSRGG GGKHGVRAAS CVGATGGVIA GDMAEVELLR RAQPAVGGGE  60
TVYQECPKNH AASLGGHGAG RLRGVHAVVG GEPADPTSLM CAACGCHCNF HCWLLEGSPP  120
PPPPLALPGP PMPANVLHGQ LHREEETPEV RLPRVDGDES DNNSDGSEYY DERSVSPPSP  180
PHLPAPVVHQ PYYPSAQHML LSLGSSGQAQ RLPL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.15e-28zinc-finger homeodomain protein 9
SwissprotQ6ER215e-29ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0E0HQC81e-152A0A0E0HQC8_ORYNI; Uncharacterized protein
STRINGONIVA06G16260.11e-152(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2165755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-10zinc finger homeodomain 1