PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G19210.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 351aa    MW: 37076.8 Da    PI: 4.3846
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G19210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27181237257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++  tY+g H 
  ONIVA06G19210.1 181 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRLDPSFLLLTYTGAHS 237
                      599*************************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-28166237IPR003657WRKY domain
SuperFamilySSF1182901.23E-23175238IPR003657WRKY domain
PROSITE profilePS5081127.623175242IPR003657WRKY domain
SMARTSM007741.7E-31180241IPR003657WRKY domain
PfamPF031063.0E-22182237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDGDAWWYPG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ TGGGWGDQAP MVVDELCGAL VAAPPPPPKQ  120
QEVLQVQQQP PPADNTQPTT DQQGSGGDGE STRAGGSRSA RRKKKQTRKE VVRVAASGPA  180
PDSWAWRKYG QKPIKGSPYP RGYYRCSSNK NCAARKQVER CRLDPSFLLL TYTGAHSGHD  240
VPLHRNSLAG TTRHKPPPPP PLPSAADKSP ATAAEAATAS QSPGLSPTTP LRASSMELHG  300
EDDAEAELQV EEDDMAIDDE DDDDVADETI STVPWGTPIS DAIIAASYEW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-151822421674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881961.10.0WRKY transcription factor 22-like
TrEMBLA0A0E0HRG20.0A0A0E0HRG2_ORYNI; Uncharacterized protein
STRINGONIVA06G19210.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-35WRKY family protein