PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G24230.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 635aa    MW: 70192.2 Da    PI: 7.0515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G24230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-18243290148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed++l ++v+ +G g+W+++ r  g++R++k+c++rw ++l
  ONIVA06G24230.2 243 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 290
                      79******************************************9986 PP
2Myb_DNA-binding41.82.5e-13296339146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+e +++++  lG++ W++ a+ ++ gRt++++k++w++
  ONIVA06G24230.2 296 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 339
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.639238294IPR017930Myb domain
SuperFamilySSF466893.74E-30240337IPR009057Homeodomain-like
SMARTSM007175.2E-16242292IPR001005SANT/Myb domain
PfamPF002495.8E-17243290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-24244297IPR009057Homeodomain-like
CDDcd001676.79E-12245290No hitNo description
SMARTSM007171.9E-12295343IPR001005SANT/Myb domain
PROSITE profilePS5129416.24295345IPR017930Myb domain
PfamPF002495.3E-12296339IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23298343IPR009057Homeodomain-like
CDDcd001671.86E-9298339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN  60
GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPQ TLVGPPRDGS  120
PFRPRTRAIV IGGRLLLASS SLLRLVYYST SLSAAAAAAA AHLVSTPGSS PMEEEEEAAR  180
LAGSQGESPA MLHPNGDGDG DGGDDEGDAS GGEEEQGGVA RAGVRRRGGG GRVRVRGRIP  240
LKKGPWTPDE DKRLREYVEA HGEGNWNRVQ RNAGLNRCGK SCRLRWANHL KPDLKKGPFS  300
KEEEEMIIKL HLWLGNKWAK MANSLPGRTD NEIKNFWNTR CKRIQRTGEP LYPKEFNHFK  360
LTDLEVMNCE SPDESRAKKR TNEVLQGNGQ SYKEVFFDNL DYSRPENYIR PNCVTPNSLP  420
VDATSPFGSA IATQDQSVPF GSAIVSGHPI LDGNFSTSGT IQRPMNVELP SLQYPNYDFN  480
NNNAWSYHDP LGHPIDQVDF GSLRSEYLSP NNNGLLDALV HGGHGQGELA NSQGSFDACF  540
PRVQCNQVIQ SNAFSLSSSF PIIGDDLLEN IYCQFNEELP PSNEQFAKDA DDAFGHGGLS  600
DETNLAAAGQ GDEHDLENPW ASMPGACDIP DFPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-272413435106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLA0A0E0HT980.0A0A0E0HT98_ORYNI; Uncharacterized protein
STRINGONIVA06G24230.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-54myb domain protein 101