PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G25940.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 986aa MW: 97301 Da PI: 6.0879

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G25940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	121	172	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge ONIVA06G25940.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69******.8*****95....258**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-4	121	172	IPR001471	AP2/ERF domain
CDD	cd00018	2.04E-18	121	178	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.5E-21	122	179	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-14	122	179	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.701	122	179	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-18	122	187	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVHVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPPLSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGCG VGRGGGGGRG 360 RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA 420 YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT 480 AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SAVISPVLAA SASAAAAFAP APAPAAAEVI 540 PPPPPLPAAA STAAAPAAER KRKLLTASSL SSSGGERGRG RARGRGRVAD AAIAGGSRGR 600 GRGCGLTPAV VTVGAPPPPS AAPAPAPASA LSLEPNDIIA PVMSSTLAPG ASTAAAAAPA 660 VAPPVAAPEA ILIPMPPPAA AVAAAAPVPK KRKLLTASTL SGSGGPGRGR GRVAKATFAG 720 RGRGVWSGRG RGRGRIPTEV TVGTPSPSAP TPAPASATAP LIQSNVVISP VPPTLAASGV 780 AAWPPVPAIP ELTTAAAAPL PKKPVLTAHD VVMATLFPNG VFSYTAWSSH APPPPVASGS 840 FFQEVIPPGG VPTNYAIHEA PDFDPNVFFA DVPDGEQDEL VLLSLTSTLL DVDNSLTLVA 900 DDAASSPQAA VDVASSSAQA AIDVPSSSVL AVIDIPSSSA QAAIDVPASS AQAATDVASS 960 STQGAAGNER PIMFDFDLNE PASNFE

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS  60
GLELVIVHVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE  120
TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD  180
PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS  240
SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP  300
VQVPAPPLSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGCG VGRGGGGGRG  360
RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA  420
YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT  480
AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SAVISPVLAA SASAAAAFAP APAPAAAEVI  540
PPPPPLPAAA STAAAPAAER KRKLLTASSL SSSGGERGRG RARGRGRVAD AAIAGGSRGR  600
GRGCGLTPAV VTVGAPPPPS AAPAPAPASA LSLEPNDIIA PVMSSTLAPG ASTAAAAAPA  660
VAPPVAAPEA ILIPMPPPAA AVAAAAPVPK KRKLLTASTL SGSGGPGRGR GRVAKATFAG  720
RGRGVWSGRG RGRGRIPTEV TVGTPSPSAP TPAPASATAP LIQSNVVISP VPPTLAASGV  780
AAWPPVPAIP ELTTAAAAPL PKKPVLTAHD VVMATLFPNG VFSYTAWSSH APPPPVASGS  840
FFQEVIPPGG VPTNYAIHEA PDFDPNVFFA DVPDGEQDEL VLLSLTSTLL DVDNSLTLVA  900
DDAASSPQAA VDVASSSAQA AIDVPSSSVL AVIDIPSSSA QAAIDVPASS AQAATDVASS  960
STQGAAGNER PIMFDFDLNE PASNFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	576	585	RGRGRARGRG
2	576	586	RGRGRARGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005386	0.0	AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881953.1	0.0	calphotin
TrEMBL	A0A0E0HTW0	0.0	A0A0E0HTW0_ORYNI; Uncharacterized protein
STRING	ONIVA06G25940.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13787	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	6e-12	ERF domain protein 12