PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G25990.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 418aa    MW: 43132.5 Da    PI: 5.9249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G25990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.5e-14129181255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G r ++ +g+++AeIr     +   ++ r++lg+fgtaeeAa a++ a+  ++g
  ONIVA06G25990.1 129 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 181
                      8********.**********5...445588*********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-24128190IPR001471AP2/ERF domain
PfamPF008472.6E-8129177IPR001471AP2/ERF domain
PROSITE profilePS5103220.495129189IPR001471AP2/ERF domain
CDDcd000182.13E-23129189No hitNo description
SuperFamilySSF541713.66E-17129189IPR016177DNA-binding domain
SMARTSM003801.8E-24129195IPR001471AP2/ERF domain
PRINTSPR003672.8E-9130141IPR001471AP2/ERF domain
PRINTSPR003672.8E-9155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF  60
AAAAAAVEGE INTEGLAALA AEAEGFAAAN GEGWVAPAVE GEGEGFVGAP VVEGEEGLTA  120
ELPVAAERKY RGARKRPWGK YAAEIRIRNT MGVKERVWLG TFGTAEEAAW AYDTAATVIH  180
GDKATTNFPR APLRPATTPV MRSMLVFFGI AHLVRSLVPR ARGPRGRGGG AGGRGRSRRR  240
RAAAAAAPSA PASEAPSPPP PSSALVPEPE LQVQGGRGER GRGRGRGRGG GRGGRRGRGR  300
TPARVVAEDS PMLQATTPAA APAPAPALAP APANQAIFQP MIIPPGGVVV APDDFLLSAI  360
SDDEPVLPHK KPKLLGVYTP PDSPDQFVME FFADLGDGDD ILSSSFWQDP AGDGEDTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16124189872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283292RGRGRGGGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HTW50.0A0A0E0HTW5_ORYNI; Uncharacterized protein
STRINGONIVA06G25990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-13ERF family protein