PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G26970.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 518aa    MW: 57136.6 Da    PI: 7.2113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G26970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05265287123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cg+ F++   L  H+++H
  ONIVA06G26970.1 265 YSCSFCGREFRSAQALGGHMNVH 287
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-6262291No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4263289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.9E-6265288IPR007087Zinc finger, C2H2
SMARTSM003550.002265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAFLCERLPP VLLLVDVVFV CAVYAAHRCG TLVDFVCAVG VVVELLYKMV YHKVNKTKSE  60
AQDQQTCGEV DPGGEEEKQS KGRVQDGANI KEKRITKQSA QVMAQESKLD LLLKTLEENE  120
KRRQEAEARA RADVAEIKAA VESRLPQMEK CITDINSALG ALNHKVEQLE DSVAKGAGLE  180
KLGRDLKVET SEQLGDQTPK FLHARYWILA RRKLGDQKAP LFPTPHITIG AGGSSASYYE  240
SWEERAFAED SAGHLGGCIW PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV  300
EDGTGGESHG MPPNQNYMIQ PCPPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA  360
RSLLQVAAAR TALGKQVLNA PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL  420
RVGKNELKIT TVLGCRSRRD FMYDNDRADD EKTVEASHKK RRIDLEVNPL ILTSSTSNHQ  480
QQDGGDDQHH EKILKLYRSS SVEELDLELR LGEAPKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-13260287229superman protein
2l1o_A2e-13260287229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444520.0AC144452.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0025G07, complete sequence.
GenBankAK1088290.0AK108829.1 Oryza sativa Japonica Group cDNA clone:002-151-G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCT8289470.0CT828947.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638381.10.0uncharacterized protein LOC4338296
TrEMBLA0A0E0HU890.0A0A0E0HU89_ORYNI; Uncharacterized protein
STRINGONIVA06G26970.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-25C2H2 family protein