PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G27450.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 370aa    MW: 39072.9 Da    PI: 6.6161
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G27450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217e-075297342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  ONIVA06G27450.1 52 VWVCEVCEVAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 97
                     689*****************************44677777888775 PP
2CCT70.34.7e-24294337144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  ONIVA06G27450.1 294 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 337
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1949IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3815097IPR000315B-box-type zinc finger
SMARTSM003366.0E-135097IPR000315B-box-type zinc finger
CDDcd000213.13E-75397No hitNo description
PfamPF062038.4E-18294336IPR010402CCT domain
PROSITE profilePS5101716.896294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELRKYWGVG GRRCGACEAS PAAVHCRGCG GVYLCTACDA RPGHARAAHE RVWVCEVCEV  60
APAAVTCKAD AAVLCAACDA DIHDANPLAR RHARVPVAPI GSAAAAAVAA EAMLFGVAAA  120
GAEAEAVEEK AAAEHHHHQQ RQQHGALNLN VEAKDMKLDY LFSDLDPYLN VEFARFPHAD  180
SVVPNGAGAG AAIELDFTCG LGVGVGGAKQ SYSSYTATDL AHSGSSSEVG VVPEAMCGGG  240
GAIDLDFTRP KPQPYMPYTA TPPPSHSVVS AQMSSSVVDV GVVPERAAAM GEGREARLMR  300
YREKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRADHD ADDADADADD PAAVPSSYML  360
DFGYGVVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4066130.0CU406613.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641209.10.0zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0E0HUE90.0A0A0E0HUE9_ORYNI; Uncharacterized protein
TrEMBLA2YFR90.0A2YFR9_ORYSI; Uncharacterized protein
TrEMBLI1Q4840.0I1Q484_ORYGL; Uncharacterized protein
STRINGONIVA06G27450.10.0(Oryza nivara)
STRINGORGLA06G0194700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.13e-18CONSTANS-like 2