PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G30350.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 192aa    MW: 20803.7 Da    PI: 4.5273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G30350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.61.1e-1766121359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWr  GqK v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  ONIVA06G30350.1  66 DGYNWRMCGQKLVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 121
                      9***************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-1762122IPR003657WRKY domain
SMARTSM007741.2E-1064122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-1664122IPR003657WRKY domain
PfamPF031065.3E-1666121IPR003657WRKY domain
PROSITE profilePS5081114.30966123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MENNQSGQAQ DGMADQRFRS WLTEQLNMQQ QNAGCSSNPA PAVMQMPALP SHTDYGGIYP  60
NPTEYDGYNW RMCGQKLVQG GCHQKFYYEC SQANCGAEKS VTRSADGQIK KTVCKGSHNH  120
PRSSERVFGD GSATLDAIPV GEILQAAGVI RPSVAMPRNE EEDGLQSGSS DSEDDDASEA  180
RAAGDDNAIR CY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649132.11e-132zinc finger BED domain-containing protein RICESLEEPER 1-like
RefseqXP_015649133.11e-132zinc finger BED domain-containing protein RICESLEEPER 1-like
TrEMBLA0A0E0HVJ11e-142A0A0E0HVJ1_ORYNI; Uncharacterized protein
STRINGOMERI08G05560.11e-143(Oryza meridionalis)
STRINGONIVA06G30350.11e-143(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-16WRKY DNA-binding protein 58