PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G02150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 290aa    MW: 31192.9 Da    PI: 9.3464
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G02150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.55.1e-29133187358
        CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQ+++I++RR +Rak+e+e+++ ++srkpylheSRh+hA+rR+Rg gGrF
  ONIVA07G02150.1 133 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRSRKPYLHESRHRHAMRRARGIGGRF 187
                      9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-31129190IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.013130190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-22133155IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-29133187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860135155IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-22164187IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEDTRILQNH HQQILAAGRQ LQQRHHFPAM PPERHHHPPP PAPGSPAMKF PIISGDSDLG  60
KDLKFHESSA PTIAAYSPLQ EYQGHFELAL GHSMVCTNFC NSEQSYGVYS PYGAQTMAGR  120
MLLPPAIATD VGPIYVNAKQ FNGIIRRRLA RAKAEREHRV SRSRKPYLHE SRHRHAMRRA  180
RGIGGRFLNT KNASSAAAAA PVSSGGGDHG ASNKSSSASE ATRVYDDDDD DMGAGGGGDG  240
GDFHHAMGHL RSPAFFPSLA AMMDGGGGGG EGKWATATPH HGCRVDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-17133189461HAPB protein
4g92_A2e-17133189461HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171180RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054541e-179AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149631e-179AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-179CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-155nuclear transcription factor Y subunit A-2
TrEMBLA0A0E0HWT90.0A0A0E0HWT9_ORYNI; Uncharacterized protein
STRINGONIVA07G02150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-25nuclear factor Y, subunit A10