PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G08430.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 175aa MW: 19892.7 Da PI: 8.5183

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G08430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	23.2	7.4e-08	74	126	36	79
GRAS 36 dpmqRlaayfteALaarlarsvselykalppsetsekn.........sseela 79 +pm R++ayf++ALa r++r++++++++ +p+e +++ s++ ++ ONIVA07G08430.1 74 TPMPRVVAYFAKALALRVVRMWPHMFEISAPWELTDDAfnsdddafnSDDDAM 126 89*****************************9999776655555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.6E-5	74	126	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MRSPPPLHAD STPARRRGEE MCEMGRVVRW ADKLFWRTME ATVKEHRRGG QRGGQGEEGE 60 AHCVRRDGFT GGPTPMPRVV AYFAKALALR VVRMWPHMFE ISAPWELTDD AFNSDDDAFN 120 SDDDAMALRI LNTITRAKTE TSPGRAKAEE MFVRERMCNG MVAATGVRLP ERRLW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	1e-117	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0HZ21	1e-125	A0A0E0HZ21_ORYNI; Uncharacterized protein
STRING	ONIVA07G08430.1	1e-126	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23660	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	2e-10	GRAS family protein