PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G09950.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 135aa    MW: 15791.1 Da    PI: 11.4109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G09950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-082568348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  ONIVA07G09950.1 25 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 68
                     79****************99.********9.***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-5127IPR009057Homeodomain-like
SuperFamilySSF466892.63E-15169IPR009057Homeodomain-like
PROSITE profilePS512949.298121IPR017930Myb domain
PROSITE profilePS500907.3641868IPR017877Myb-like domain
SMARTSM007178.4E-42270IPR001005SANT/Myb domain
PfamPF002492.8E-62567IPR001005SANT/Myb domain
CDDcd001672.06E-42567No hitNo description
Gene3DG3DSA:1.10.10.607.2E-92867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MPRRSARSCR DSWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRVM  60
KHRWRELRRG GFLAAAARKE QAIDMVESEV EESADQSLPA PELQPPLSRT LLPRALVIAA  120
LPMSTRWIPW PAASR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052001e-159AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149631e-159AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.12e-60transcription factor MYB73
TrEMBLA0A0E0HZM03e-91A0A0E0HZM0_ORYNI; Uncharacterized protein
STRINGONIVA07G09950.15e-92(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.17e-15myb domain protein 70