PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G22160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1028aa    MW: 114431 Da    PI: 5.6683
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G22160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  ONIVA07G22160.1  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  ONIVA07G22160.1 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.6E-5432519IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16433519IPR014756Immunoglobulin E-set
PfamPF018331.5E-4433506IPR002909IPT domain
SuperFamilySSF484031.71E-16620726IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17625727IPR020683Ankyrin repeat-containing domain
CDDcd002047.10E-13626724No hitNo description
PROSITE profilePS5029717.263632726IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-7638727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618665697IPR002110Ankyrin repeat
SMARTSM002480.055665694IPR002110Ankyrin repeat
SMARTSM00248670704733IPR002110Ankyrin repeat
SMARTSM000154.2838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718839868IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.1E-7840889IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0055840859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633862886IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4864883IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNCR ASSRYHPFVE MQQPVDGVMM NNMLGVSAPS TSTTTANSDN  240
HFATHYDIAG VFNEAGAGLR GVSKTLHDSV RFAEPYPECS AEFMEPALYS SNATMESNNL  300
DDNSRLETFM SEALYTNNLT QKEADALSAA GIMSSQAENN SYTDGIRYPL LKQSSLDLFK  360
IEPDGLKKFD SFSRWMSSEL PEVADLDIKS SSDAFWSSTE TVNVADGTSI PINEQLDAFA  420
VSPSLSQDQL FSIIDVSPSY ACTGSRNKVL ITGTFLANKE HVENCKWSCM FGDVEVPAEV  480
LAHGSLRCYT PVHLSGRVPF YVTCSNRVAC SEVREFEFRD SDARQMDTSD PQTTGINEMH  540
LHIRLEKLLS LGPDDYEKYV MSDGKEKSEI INTISSLMLD DKCLNQAVPL DEKEVSTARD  600
QNIEKLVKEK LYCWLVHKVH DEDKGPNVLG KEGQGVIHLV AALGYDWAVR PIITAGVKVN  660
FRDARGWTAL HWAASCGRER TVGALIANGA ESGLLTDPTP QFPAGRTAAD LASENGHKGI  720
AGFLAESALT SHLSALTLKE SKDGNVKEIC GLGGAEDFAE SSSAQLAYRD SQAESLKDSL  780
SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY GDDDCGLSDE RTLSLVSIKN AKPGQNDGSH  840
SAAVRIQNKF RGWKGRKEFM IIRQKIVKIQ AHVRGHQVRK SYRRIVWSVG IVEKIILRWR  900
RKRRGLRGFQ PVKQLEGPSP IQQLEGPSQI QPAKEEEEDE YDYLKDGRKQ AEGRLQRALA  960
RVKSMTQYPE AREQYSRIAN RVTELQEPQA MMIQDDMQSD GAIADGGDFM AELEELCGDG  1020
DAPMPTIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0I4790.0A0A0E0I479_ORYNI; Uncharacterized protein
STRINGONIVA07G22160.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein