PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G22160.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1034aa    MW: 115065 Da    PI: 5.6702
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G22160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.2e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  ONIVA07G22160.2  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  ONIVA07G22160.2 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.6E-5438525IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16439525IPR014756Immunoglobulin E-set
PfamPF018331.5E-4439512IPR002909IPT domain
SuperFamilySSF484031.71E-16626732IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17631733IPR020683Ankyrin repeat-containing domain
CDDcd002047.16E-13632730No hitNo description
PROSITE profilePS5029717.263638732IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-7644733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618671703IPR002110Ankyrin repeat
SMARTSM002480.055671700IPR002110Ankyrin repeat
SMARTSM00248670710739IPR002110Ankyrin repeat
SMARTSM000154.2844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718845874IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.12E-7846895IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0056846865IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633868892IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETEKFG ATDNCRASSR YHPFVEMQQP VDGVMMNNML GVSAPSTSTT  240
TANSDNHFAT HYDIAGVFNE AGAGLRGVSK TLHDSVRFAE PYPECSAEFM EPALYSSNAT  300
MESNNLDDNS RLETFMSEAL YTNNLTQKEA DALSAAGIMS SQAENNSYTD GIRYPLLKQS  360
SLDLFKIEPD GLKKFDSFSR WMSSELPEVA DLDIKSSSDA FWSSTETVNV ADGTSIPINE  420
QLDAFAVSPS LSQDQLFSII DVSPSYACTG SRNKVLITGT FLANKEHVEN CKWSCMFGDV  480
EVPAEVLAHG SLRCYTPVHL SGRVPFYVTC SNRVACSEVR EFEFRDSDAR QMDTSDPQTT  540
GINEMHLHIR LEKLLSLGPD DYEKYVMSDG KEKSEIINTI SSLMLDDKCL NQAVPLDEKE  600
VSTARDQNIE KLVKEKLYCW LVHKVHDEDK GPNVLGKEGQ GVIHLVAALG YDWAVRPIIT  660
AGVKVNFRDA RGWTALHWAA SCGRERTVGA LIANGAESGL LTDPTPQFPA GRTAADLASE  720
NGHKGIAGFL AESALTSHLS ALTLKESKDG NVKEICGLGG AEDFAESSSA QLAYRDSQAE  780
SLKDSLSAVR KSTQAAARIF QAFRVESFHR KKVVEYGDDD CGLSDERTLS LVSIKNAKPG  840
QNDGSHSAAV RIQNKFRGWK GRKEFMIIRQ KIVKIQAHVR GHQVRKSYRR IVWSVGIVEK  900
IILRWRRKRR GLRGFQPVKQ LEGPSPIQQL EGPSQIQPAK EEEEDEYDYL KDGRKQAEGR  960
LQRALARVKS MTQYPEAREQ YSRIANRVTE LQEPQAMMIQ DDMQSDGAIA DGGDFMAELE  1020
ELCGDGDAPM PTIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0I4800.0A0A0E0I480_ORYNI; Uncharacterized protein
STRINGONIVA07G22160.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein