PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G22160.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 999aa    MW: 111295 Da    PI: 5.6659
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G22160.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.52.1e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  ONIVA07G22160.3  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  ONIVA07G22160.3 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.3E-5403490IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16404490IPR014756Immunoglobulin E-set
PfamPF018331.4E-4404477IPR002909IPT domain
SuperFamilySSF484031.71E-16591697IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-17596698IPR020683Ankyrin repeat-containing domain
CDDcd002046.82E-13597695No hitNo description
PROSITE profilePS5029717.263603697IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-7609698IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055636665IPR002110Ankyrin repeat
PROSITE profilePS500889.618636668IPR002110Ankyrin repeat
SMARTSM00248670675704IPR002110Ankyrin repeat
SMARTSM000154.2809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718810839IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.04E-7811860IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0054811830IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633833857IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4835854IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETGYHG EMQTTTANSD NHFATHYDIA GVFNEAGAGL RGVSKTLHDS  240
VRFAEPYPEC SAEFMEPALY SSNATMESNN LDDNSRLETF MSEALYTNNL TQKEADALSA  300
AGIMSSQAEN NSYTDGIRYP LLKQSSLDLF KIEPDGLKKF DSFSRWMSSE LPEVADLDIK  360
SSSDAFWSST ETVNVADGTS IPINEQLDAF AVSPSLSQDQ LFSIIDVSPS YACTGSRNKV  420
LITGTFLANK EHVENCKWSC MFGDVEVPAE VLAHGSLRCY TPVHLSGRVP FYVTCSNRVA  480
CSEVREFEFR DSDARQMDTS DPQTTGINEM HLHIRLEKLL SLGPDDYEKY VMSDGKEKSE  540
IINTISSLML DDKCLNQAVP LDEKEVSTAR DQNIEKLVKE KLYCWLVHKV HDEDKGPNVL  600
GKEGQGVIHL VAALGYDWAV RPIITAGVKV NFRDARGWTA LHWAASCGRE RTVGALIANG  660
AESGLLTDPT PQFPAGRTAA DLASENGHKG IAGFLAESAL TSHLSALTLK ESKDGNVKEI  720
CGLGGAEDFA ESSSAQLAYR DSQAESLKDS LSAVRKSTQA AARIFQAFRV ESFHRKKVVE  780
YGDDDCGLSD ERTLSLVSIK NAKPGQNDGS HSAAVRIQNK FRGWKGRKEF MIIRQKIVKI  840
QAHVRGHQVR KSYRRIVWSV GIVEKIILRW RRKRRGLRGF QPVKQLEGPS PIQQLEGPSQ  900
IQPAKEEEED EYDYLKDGRK QAEGRLQRAL ARVKSMTQYP EAREQYSRIA NRVTELQEPQ  960
AMMIQDDMQS DGAIADGGDF MAELEELCGD GDAPMPTIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0I4810.0A0A0E0I481_ORYNI; Uncharacterized protein
STRINGORUFI07G23760.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein