PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G22540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 810aa    MW: 89029.1 Da    PI: 4.4998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G22540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-1132107348
                      SS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 
                      +W+teEd+ l   ++++G++                               +W+ Ia+ +   +t+ qc+ rw++yl
  ONIVA07G22540.1  32 SWSTEEDDVLRTQIALHGTDkyeffplpisidfffldlitifytvfpfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 107
                      6***********************************************************9.**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.30825111IPR017930Myb domain
SMARTSM007174.0E-629109IPR001005SANT/Myb domain
CDDcd001672.24E-632107No hitNo description
PfamPF139215.7E-1033123No hitNo description
Gene3DG3DSA:1.10.10.602.5E-153352IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1675111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-1584114IPR009057Homeodomain-like
SMARTSM007171.5E-5112190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15115191IPR009057Homeodomain-like
CDDcd001677.72E-4116187No hitNo description
PROSITE profilePS512947.951141192IPR017930Myb domain
SuperFamilySSF466891.04E-16160189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DKYEFFPLPI  60
SIDFFFLDLI TIFYTVFPFP FGSWTIIAAQ FKDKTARQCR RRWYNYLNSE CKKGGWSREE  120
DLLLCEISEL ANMRSVTSSV RQQARHIAMT MELSMYAQKV LGNKWTEIAK VVSGRTDNAV  180
KNRFSTLCKR RAKDDELFKE NGSLCSSTSA KRALVQTGCL TSGASGSAPP IKQMRPCNSD  240
FKENMTPNMR LVGQDKSTQD SRQPLAIVYQ NNQDNMNTMD TQNLVAKTAA KQLFAGEQNC  300
VKHEGNFLNK DDPKIATLLQ RADLLCSLAT KINTENTSQS MDEAWQQLQH HLDKKDDNDM  360
SESSMSGMAS LLEDLDDLIV DPYENEEEED QDLREQTEQI DVENKQNSSQ TSMEVTSQMV  420
PDNKMEDCPN DKSTEDNNME PCPGEDIPTS ENLTEAAIED SLLQCVEYSS PVHTVIQAKT  480
DAEIAASENL SEVLEHNRLQ CIQLASPAQT TTPVEANAET PASEKLSEVV KCNNPSCIEF  540
TSPAHTVPTF LPYADDMPTP KFTASANDWG GVVMDLDFVA ASPAGSRWMA ESAARRRQQR  600
RFSSPSLRAY LTPAFDAVAA GVDGVSPYSG SASSSGGMDL GLDDSLLRYR RACFSSAATT  660
DLDHRLLVYS PQSAPVYPPP PAGDVVVAGG CRYDSKRQAG GQTGAPGYQD FNDISSLFSP  720
WQPSADHPTA TARGIPNKPP ADIRSREDTV IQAARAELST PKPDEATTPS AQPASTQAEP  780
IEEDEELIIQ TLYGQSNGRR LPIFRSICPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882808.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0I4C60.0A0A0E0I4C6_ORYNI; Uncharacterized protein
STRINGONIVA07G22540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-68MYB family protein