PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G22640.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 261aa MW: 29367 Da PI: 7.6968

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G22640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2e-05	35	83	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L ++++ +k+ ONIVA07G22640.1 35 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLSETTRILKD 83 68899**********************997....4556666677666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-8	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.39E-4	32	89	No hit	No description
PROSITE profile	PS50888	11.23	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVPRDRVNAA AGGGVEGRLV QSGIVNKKCD KKAPKRIHKS EREKLKRDKQ NDLFNELGNL 60 LEPDRQNNGK ACVLSETTRI LKDLLSQVES LRKENSSLKN ESHYVALERN ELHDDNSMLR 120 TEILELQNEL RTRMEGNPVW SHVNTRPALR VPYPTTGVFP VQHLPHLPVT TTGAFPQQQP 180 VIIEQHYAAT PRELQLFPES ATSEDSEPSQ QHGISDHVTR PQPRYPTPTA TLPVNLFPVL 240 PGRQDQQCSS GTSDEDRIGR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070963	0.0	AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
GenBank	HQ858856	0.0	HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645391.1	1e-180	transcription factor BHLH062-like
Refseq	XP_015645393.1	1e-180	transcription factor BHLH062-like
Swissprot	Q69V10	0.0	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0I4D6	0.0	A0A0E0I4D6_ORYNI; Uncharacterized protein
STRING	ONIVA07G22640.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-36	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]