PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G27260.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 406aa    MW: 43943.2 Da    PI: 6.5183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G27260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08329357129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W++  ++ l+++v+++G+g+Wk I  
  ONIVA07G27260.1 329 RKKWSEKQEKTLLEGVEKYGKGNWKDIKM 357
                      789***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.307324367IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-8325358IPR009057Homeodomain-like
SuperFamilySSF466892.92E-8327367IPR009057Homeodomain-like
PfamPF002491.3E-6329359IPR001005SANT/Myb domain
CDDcd116601.82E-12330376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLVGESTALE ILDTLQRPDA STNHPGTLPQ  180
VDNAPETNGA SHCAQQNDGA KSGLVKQNAE ADRPQQDSTR HQQDSVQGAS NSQLKESSVT  240
MESIRGTGPD ITGFMEEATP RVAGQFAPDN IKNHQVTGSK RSLMERNPTA STYEWDGSDS  300
EGKRPAAKRR LPIFERTAKP SPTAAHKTRK KWSEKQEKTL LEGVEKYGKG NWKDIKMAYP  360
DVFEDRSTDR GAISDRGAMS VGTSCSERLF SIFYLHDGLT EGFMPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719400.0AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLA0A0E0I6500.0A0A0E0I650_ORYNI; Uncharacterized protein
STRINGONIVA07G27260.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-05TRF-like 5