PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G08540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 302aa    MW: 29798.8 Da    PI: 5.6838
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G08540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-061658542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C  ++   ++ +C  +   lC  C  + H        H++vpl
  ONIVA08G08540.1 16 ACGVCGGA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58
                     6******9.*********************66899999999986 PP
2CCT66.66.7e-23191234144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  ONIVA08G08540.1 191 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 234
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-91258IPR000315B-box-type zinc finger
PROSITE patternPS0019701220IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
PROSITE profilePS501199.3431758IPR000315B-box-type zinc finger
CDDcd000211.92E-62558No hitNo description
PfamPF062032.0E-17191233IPR010402CCT domain
PROSITE profilePS5101716.479191233IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASDGSASPA SCGGAACGVC GGAATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV  60
AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAAVQGQGQG SPNDSSSSFT NDSAGGGGGG  120
GAERSLFDLL SDVDIMSCGG GGLASSFDGA AAPPLWLHPG QLAALTPWSP ADSVVVPTSA  180
AGAVAAAAAA REERVRRYRE KRKNRKFQKT IRYASRKAYA EARPRIKGRF VKRATTAAAS  240
SSSDDDSTAA AGVSGAGGAG AGATEEAKFW LSFSDDGRAD GVGFYMDSTT AATAAYGVVP  300
TF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054950.0AP005495.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03.
GenBankAP0057990.0AP005799.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648718.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0E0I9900.0A0A0E0I990_ORYNI; Uncharacterized protein
STRINGONIVA08G08540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.15e-10CONSTANS-like 5