PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G10560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 203aa    MW: 21749.8 Da    PI: 10.8608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G10560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05145167123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cg+sFs+   L  H  +H
  ONIVA08G10560.1 145 FKCSVCGRSFSSYQALGGHKTSH 167
                      89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-6144171No hitNo description
PROSITE profilePS5015711.78145172IPR007087Zinc finger, C2H2
PfamPF139122.8E-12145168IPR007087Zinc finger, C2H2
SMARTSM003550.0081145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MIRENRGPTC QRGHVSTLSL FPLLSLPPLS LSLFSASRPV AGAKAARVRR RRQVANGETE  60
ALHAAVLKEE EQQHEVEEAA VVTSSSATSG EEGGHLPQGW AKRKRSRRQR SEEENLALCL  120
LMLALGGHHR VQAPPPLSAP VGAEFKCSVC GRSFSSYQAL GGHKTSHRFK LPTPPASPVL  180
APASSEVQSP LAFSPRNSAA ARI
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.11e-118zinc finger protein 1, partial
SwissprotQ424301e-36ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0I9Z01e-141A0A0E0I9Z0_ORYNI; Uncharacterized protein
STRINGONIVA08G10560.11e-142(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.17e-10zinc-finger protein 1