PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G11320.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 403aa    MW: 45957.2 Da    PI: 7.3872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G11320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-17351141398
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ +++pk+f+++ +g+   + +++le+ + +s++v++  +k+++++++++GW +Fvk  +L+ gD+++F+++g+s+f   v +f+
  ONIVA08G11320.1  35 QHEITIPKEFVQRLKGD--IPEEIQLETHNRNSYTVRV--DKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQF--DVIIFD 114
                      5679*******999888..5668***************..**********************************9999..777776 PP
2B340.55e-133193991499
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + l++ k++++e+ gg+       +  ++ g +W ++l   +++g+ + + +GW++Fv++n+  +gD+++F+l +++++++ v+++++
  ONIVA08G11320.1 319 STLSVAKRYVDEYlGGE-----RFISLSRLGGKWGIRL--AGGGGSgTRMVGGWQKFVNENDFGVGDICLFELLKNHKGTMEVHIIKA 399
                      67999999999996544.....2555678999******..555555588999********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.2123116IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1923114IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-625116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1830115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1534114No hitNo description
PfamPF023627.2E-1435114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-17298400IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-16300400IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-14303398No hitNo description
SMARTSM010191.9E-8305400IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321306400IPR003340B3 DNA binding domain
PfamPF023626.2E-11318399IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGTWCERCRR RDEQDYRNLD DCQKHLLLLM MGDFQHEITI PKEFVQRLKG DIPEEIQLET  60
HNRNSYTVRV DKSQEKVIFA AGWAQFVKTF DLRMGDSMMF RFKGNSQFDV IIFDQVGREK  120
VCSVAVDDYL DPNVQEGRTD ATETLNSSRA HSQDDYLDPN VQEGRTNATE TLNSSRAHSQ  180
PMPMQTPATE TLNSSRAHPQ PMPMQLPTET VNHFHAPHYP MQMPIENMAL SRTQAMPTQM  240
QSPPTYRWTQ VQRDNLRYSL PSEDQGCRVG VIPDPIIGRR TKLNPVQEKV VNFKIQHIHS  300
EIPIFVAVIK RSNVSGVLST LSVAKRYVDE YLGGERFISL SRLGGKWGIR LAGGGGSGTR  360
MVGGWQKFVN ENDFGVGDIC LFELLKNHKG TMEVHIIKAK DIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2234410.0AC223441.1 Oryza glaberrima, complete sequence.
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
GenBankAP0046370.0AP004637.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0703C03.
GenBankAP0054930.0AP005493.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875809.10.0putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D20.0Y8251_ORYSJ; Putative B3 domain-containing protein Os08g0325100
TrEMBLA0A0E0IA980.0A0A0E0IA98_ORYNI; Uncharacterized protein
STRINGONIVA08G11320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein