PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G13220.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 613aa    MW: 67302.2 Da    PI: 8.6536
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G13220.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR36.97.2e-12171209342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  ONIVA08G13220.2 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                      789************************.********9875 PP
2TCR47.34.2e-15252292141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  ONIVA08G13220.2 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.493170292IPR005172CRC domain
PfamPF036385.1E-8172206IPR005172CRC domain
SMARTSM011147.4E-16252293IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11255290IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC  240
ESKAAEGDIV GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASAL SCSLTSSVTR EDAKSLVKYA  360
PHEVTYRPSL ADIIQIEDVN ELCNLLILVS RQAGATLLES GMKENTKRKK LNRVDSCLSS  420
TNHDREAIQK EPAKQMCSLE KSSNEVLIAE GRLELPRADP FDIQKGNKRP LSPGTQALMC  480
DEQDAIFQDS KAPDATPSTT EENLVDIFKE QEKLVLTNFR DYLCKLATCG KLQELKLSLA  540
STNCSEQAFA DHGNNSSITR VAKDQTNNPS VLQQGGKHYR SGRLILARTK IGNAGIWKLM  600
GQKSPLHNGV DKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2517429614127Protein lin-54 homolog
5fd3_B2e-2517429614127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0IB030.0A0A0E0IB03_ORYNI; Uncharacterized protein
STRINGONIVA08G13220.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.25e-63Tesmin/TSO1-like CXC domain-containing protein