PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G13220.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 467aa    MW: 51492.4 Da    PI: 8.2057
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G13220.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.45.1e-121351342
              TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                     k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  ONIVA08G13220.3 13 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 51
                     789************************.********9875 PP
2TCR47.83e-1594134141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  ONIVA08G13220.3  94 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 134
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-71151IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.49312134IPR005172CRC domain
PfamPF036383.6E-81448IPR005172CRC domain
SMARTSM011147.4E-1694135IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.9E-1297132IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MWSETKDVTL TRKTNCSCKY SKCLKLYCEC FEKGRYCIGC NCTNCCNNVN HENARQDAIN  60
VALERNPAAF MPKVSNSTAH NCESKAAEGD IVGKHTKGCK CKRTECLKKY CECFKASVFC  120
SENCRCTGCK NYKSNADRIS QKNTVHAHHV QNPASSGMVG QSVIIFHAAE NDSSLSLAAS  180
VSDHSINNNT SHALSCSLTS SVTREDAKSL VKYAPHEVTY RPSLADIIQI EDVNELCNLL  240
ILVSRQAGAT LLESGMKENT KRKKLNRVDS CLSSTNHDRE AIQKEPAKQM CSLEKSSNEV  300
LIAEGRLELP RADPFDIQKG NKRPLSPGTQ ALMCDEQDAI FQDSKAPDAT PSTTEENLVD  360
IFKEQEKLVL TNFRDYLCKL ATCGKLQELK LSLASTNCSE QAFADHGNNS SITRVAKDQT  420
NNPSVLQQGG KHYRSGRLIL ARTKIGNAGI WKLMGQKSPL HNGVDKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-261613814127Protein lin-54 homolog
5fd3_B6e-261613814127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0IB020.0A0A0E0IB02_ORYNI; Uncharacterized protein
STRINGONIVA08G13220.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.22e-63Tesmin/TSO1-like CXC domain-containing protein