PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G16460.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26358.3 Da    PI: 8.7727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G16460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-131050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +    f kR++g+ KKA+ELS+LC ++ +++++++
  ONIVA08G16460.1 10 RIINDAKWRAAFKKRLKGLKKKASELSTLCSVDTCLMVYGE 50
                     77888888999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.236150IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-9161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-19186IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-121050IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARNKVKLQR IINDAKWRAA FKKRLKGLKK KASELSTLCS VDTCLMVYGE GEVQATEVWP  60
SVQEATRVLE RFKAMPQLDK YKKTMDLDGF IKERTDKLQE KLHKVRRDAD ESETKILIVE  120
AFYSRCAGLE DLTIEQLTSL GWMANAQLKI VNNHFQKFHE QGLLPESASL SGMNVPPYTI  180
AGYLAVEEAQ MQREGWLMNI ARGIGSLGYN GFEGSSGSAT AEPNGDMVQH LNKGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629573.11e-117agamous-like MADS-box protein AGL80
TrEMBLA0A0E0IC411e-175A0A0E0IC41_ORYNI; Uncharacterized protein
STRINGONIVA08G16460.11e-176(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-25AGAMOUS-like 80