PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G19230.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 403aa    MW: 42544 Da    PI: 7.1433
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G19230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.2e-102302562854
                      HHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRak 54 
                      +++  LAk+l+L  rqV vWFqNrRa 
  ONIVA08G19230.1 230 KQKVALAKQLNLRPRQVEVWFQNRRAS 256
                      68889********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0011169264IPR001356Homeobox domain
CDDcd000867.06E-10171255No hitNo description
Gene3DG3DSA:1.10.10.601.2E-12171195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-12229255IPR009057Homeodomain-like
PROSITE profilePS5007110.657230260IPR001356Homeobox domain
SuperFamilySSF466898.55E-8230255IPR009057Homeodomain-like
PfamPF000464.9E-8230256IPR001356Homeobox domain
SMARTSM003403.5E-25278321IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10278312IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MELGLSLGDA VTVADGGRPE LVLGLGVGVG AGVRRGEEEE RGRREDVVGA ARWAAMAAAS  60
PEPSVRLSLV SSLGLHWPSE TGRSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS  120
SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGGGERSSSR ASDDDEGASA RKKLRLSKEQ  180
SAFLEESFKE HSTLNPLLLF FEYARTRECL FLLARSWPLT LMLLTGGEQK QKVALAKQLN  240
LRPRQVEVWF QNRRASAAPL TELTLFFSGA DVRRTKLKQT EVDCEYLKRC CETLTEENRR  300
LHKELAELRA LKTARPFYMH LPATTLSMCP SCERVASNPA TASTSAPAAA TSPAAAPTAA  360
ARTAVASPEP HRPSSFAALF AAPLGFPLTA AQPRPPPPAS NCL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.11e-171homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW031e-174HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0E0ID250.0A0A0E0ID25_ORYNI; Uncharacterized protein
STRINGONIVA08G19230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-58homeobox from Arabidopsis thaliana