PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20630.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1044aa    MW: 111291 Da    PI: 8.0723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20630.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078562584123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  H  +H
  ONIVA08G20630.2 562 FECPVCNKTFEEQSRYFGHVGSH 584
                      89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.023387460IPR001739Methyl-CpG DNA binding
SuperFamilySSF541718.17E-7391442IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.105.7E-4392441IPR001739Methyl-CpG DNA binding
PfamPF014292.5E-5397440IPR001739Methyl-CpG DNA binding
SMARTSM003550.41513536IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280515536IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328562589IPR007087Zinc finger, C2H2
SMARTSM003550.023562584IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280564584IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MPSSSPAGGA LALPLPSSVA EGALGLGRER GGGGSSCFVR ETRFVVPTAV VDEASMEPFV  60
CSGDAHMVLP APVVELTKYS QPNLIMNPRS SEPEASNKET TTIHKVCCRS PPPFILSPTP  120
MPLPPAIPSS PSLPAATMFQ NKELTPTQLR RRHLIPPASD TVASHRSSDR RSGGRLAGEE  180
AAWGGRRRRG GGGGAMETEV FPVVDLRVLS QSDLDALAAA SAHAVAPGGS CPDADQLPPL  240
KIDRAVFNES AGSRKQTFSR VRFGAAAAVA ASPSSPSPSA AAKLPRGNDK EDSFIAYHLR  300
RLFAPDDPSS PQTQTLALPA PPSPDPDQLT TNSKGVSVDL VSLSRLADPY DAELGKRTAG  360
MTTEEELMGF ISSLAGQWVS QRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS  420
YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT  480
GMDSQSILPV ASITFSSHSR DQDETDADDI NSYECQQCNL TFHGQSAYAH HLITFHKMGS  540
KRRKINKVGK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS  600
GKVGLSCSLQ DLVGSPQLNE KTTASEARSQ HHNCSTKHGG NSTRDAPSTW TYRNNVTNCA  660
DRTVPRTAPQ PNDHMDCRVS GFAEATNFND QAGRHQGFRP SSFGTTNHCQ GQIIDHAVAA  720
SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK GFSGSFSNND  780
GAASIVLPSS GLNNKIPSSL GVADRSSIAA RSFNAGYVNE NGASEANNIG NKNNTMVYQT  840
SLAMRPVSPC DLQLGFSGQK QQILPGYGEL RPAASGSPQL GGMAANSSIP TRPSQPQFGS  900
MARTDALPTG PSQPGSLARP NFVPTGFSQF ASRPPTSVPP ADSSQFAGGM ARQNIPTTSE  960
PTLVLGYTPQ MVNGPPAQLG WDLSLSRMVS EGMLPVLCIW CNSQFHHFGP IDAQQSGSFG  1020
FICPACKEKM SGNPNAPNNA VRVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191GGRRRRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650381.10.0uncharacterized protein LOC4345880 isoform X2
TrEMBLA0A0E0IDI90.0A0A0E0IDI9_ORYNI; Uncharacterized protein
STRINGONIVA08G20630.10.0(Oryza nivara)