PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20800.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 540aa    MW: 58831.7 Da    PI: 8.1416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17223272255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  ONIVA08G20800.1 223 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 272
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-23220293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19221296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-15223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-16223276No hitNo description
SMARTSM003531.4E-13227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK  60
RADQTPPPPP PPPPHAAVTA EKQLLHQHAL AAAGAFTISH AVAAAATAVK QEPPFAPWCQ  120
PVAAVDPRGH QWSLPFAARA VAVASSRPQQ QQQQPPPPER KGGGGFMDAG SRSSGGAGFD  180
DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR  240
FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF  300
RSSWKNAQNK GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD  360
PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHT VNCDKLNNSD LAIDEGTISL  420
SSQYSQELLN KLNQALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KVGFMSRIDT  480
KSHYIMSSLI RHLIVKQWAV SLGWVMALKN IDKPQSDTNQ ITADVVKDTD VKVLPVDYFV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBankHQ8588650.0HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0E0IDM00.0A0A0E0IDM0_ORYNI; Uncharacterized protein
STRINGONIVA08G20800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-57BES1-interacting Myc-like protein 2