PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G21960.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 435aa MW: 46497 Da PI: 6.3793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G21960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	265	284	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ ONIVA08G21960.1 265 FSCPVCFKTFNRYNNMQMHM 284 89*****************9 PP
2	zf-C2H2	12.5	0.00045	351	371	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ ONIVA08G21960.1 351 CRKCGKAFAVKGDWRTHEKNC 371 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	265	292	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.38	265	287	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.5E-6	265	284	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	267	287	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.78E-6	333	369	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	336	369	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.621	349	369	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	349	369	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	220	375	398	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AHLPPPLPPP YAALYPTAGG VGVGVGAHHH 60 HQYPPAAFFH PPPVHQQHQA PPSPPLREAL PLLSLSPTPA RRGGVVDAAA DSDSDDDDDG 120 DCCYHHLQDQ EGAAAGSTAT PAAAAARAPL FADLNCIPTC CGDDNDGGDP MDVEVAGTTA 180 DIDAAVALRI GLPAGGTEAD LLSGLTGTGV EHEEEEEDCK VDGGGSGGDD EVVPLGFSST 240 PIGKLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG 300 VQPTAMLRLP CYCCAAGCRN NIDHPRARPL KDFRTLQTHY KRKHGLKPFL CRKCGKAFAV 360 KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGHAH TALDADDDDG AVSDADAVVR 420 PSSSMAASSL QPPPR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AHLPPPLPPP YAALYPTAGG VGVGVGAHHH  60
HQYPPAAFFH PPPVHQQHQA PPSPPLREAL PLLSLSPTPA RRGGVVDAAA DSDSDDDDDG  120
DCCYHHLQDQ EGAAAGSTAT PAAAAARAPL FADLNCIPTC CGDDNDGGDP MDVEVAGTTA  180
DIDAAVALRI GLPAGGTEAD LLSGLTGTGV EHEEEEEDCK VDGGGSGGDD EVVPLGFSST  240
PIGKLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  300
VQPTAMLRLP CYCCAAGCRN NIDHPRARPL KDFRTLQTHY KRKHGLKPFL CRKCGKAFAV  360
KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGHAH TALDADDDDG AVSDADAVVR  420
PSSSMAASSL QPPPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0IE18	0.0	A0A0E0IE18_ORYNI; Uncharacterized protein
STRING	ONIVA08G21960.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]