PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G22660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 655aa    MW: 68155.6 Da    PI: 9.6825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G22660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-093062437
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     W t Ed+ll++av ++G+ +W+++a++m+  R++
  ONIVA08G22660.1 30 WGTSEDLLLACAVSRHGTASWDAVAKEMQ-SRCP 62
                     9****************************.9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-52682IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-52782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-63093IPR009057Homeodomain-like
PROSITE profilePS500906.43080IPR017877Myb-like domain
PfamPF002498.9E-93062IPR001005SANT/Myb domain
CDDcd001671.16E-63079No hitNo description
Gene3DG3DSA:1.20.920.104.8E-14275419IPR001487Bromodomain
SMARTSM002972.7E-9290403IPR001487Bromodomain
SuperFamilySSF473701.1E-14292400IPR001487Bromodomain
PfamPF004396.1E-8309387IPR001487Bromodomain
PROSITE profilePS5001410.042309384IPR001487Bromodomain
CDDcd043697.69E-11312398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MTARSGDPGV SPESSSAAAA AAGSGGGEIW GTSEDLLLAC AVSRHGTASW DAVAKEMQSR  60
CPSAAVFTPT TCRLRFRVLH RRFSGGVTAE NEDADGGEEE EEPDAAAVAG WVEELRELRV  120
AELRREVEKY DLSIGSLQSK VKRLKEEREK SISGETKPPA AAAAVKEEEE DVRKGSPEEA  180
GAVEDRVSGH ESGRSCKESN SSDLKRPEND PAVADDDDRE AEEEEAAAAP AAGDIAVKEE  240
ASGESVAGSK EADAEKESSD VQSSASPSRR RRRKGGGGGE EAEAASPSVS VPLPAAEAEP  300
LVAFLESVRT SKAGAVFERR LDSQDGERYS GTIRRHVDLE TVRSRLVGAT AAAACYASAS  360
EFYRDMMLLC ANALVFFPRG SPEHAAALQL RALVSKQVSK DRQPHAGAKA PAAAAAEEKK  420
KPAKADADIA GPLLEKAPII VCRKRSSIAK AAAAAAKGEK AEKAETDKKE KDGSEEKKKA  480
AAAATTATAA ATAKDKKARG MRTNKSRGPA RNQKTAKLSE TGEGTKKSDK KGGGGGGSSS  540
AAAAAGGVAK KRNAVDFLNR MNQNGSPSTE RVSLLETLKL SAAATEQQKK SSSSSSGKGD  600
GRKEAGGSGS KKGAAASTPP GRRIGRPPKR AAAQPTPPPS KRAKDDKPTR KRGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588400.0HQ858840.1 Oryza sativa Japonica Group isolate UT1508 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650505.10.0uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1
TrEMBLA0A0E0IEB50.0A0A0E0IEB5_ORYNI; Uncharacterized protein
STRINGONIVA08G22660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-16DNA-binding bromodomain-containing protein