PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G24870.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 483aa    MW: 50879.6 Da    PI: 5.9162
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G24870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-061455237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++ C+ ++e  + l+C+ +   lC  C  + H        H
  ONIVA08G24870.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55
                     7899*******9******************999545555555 PP
2CCT431.6e-154454731644
              CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      ++eK+irYesRK +A++R+RvKGrFvk++
  ONIVA08G24870.1 445 RYEKHIRYESRKLRADTRKRVKGRFVKSN 473
                      79************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-111360IPR000315B-box-type zinc finger
PROSITE profilePS501199.8831360IPR000315B-box-type zinc finger
CDDcd000211.82E-81660No hitNo description
PROSITE profilePS5101710.189430472IPR010402CCT domain
PfamPF062032.5E-10445472IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL  60
CAACAARPAA ARVASASAPA FLCADCDTGC GGDHGAALRV PVEGFSGCPA AAELAASWGL  120
DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG RRLKGEALGH  180
QLAEMARREA ETAHPHTQPH SDLSPRTPRR TSAAASGRLQ EKQAPPPLPH AAATAAAPEA  240
PLPYTSLLMM APANCTELME NNRVGDEDEN VLWESTAPSV PPTQIWDFNL GKSRDHNENS  300
ALEVGFGSNN GGFMIKSYND MLKEISSGTT KDLEDIYDSR YCAAAEDIMS TNVCQLSSKN  360
PSTGSNKRKV SSCASTIDGP TTSTSHVPAA SGALGGSSND RGSALPKEIS FCDQTVVPTG  420
ADQRPCTIKI DSETLAQNRD SAMQRYEKHI RYESRKLRAD TRKRVKGRFV KSNGAPDDVS  480
NGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0997220.0AK099722.1 Oryza sativa Japonica Group cDNA clone:J013088K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649825.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0E0IF390.0A0A0E0IF39_ORYNI; Uncharacterized protein
STRINGONIVA08G24870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.12e-28B-box type zinc finger protein with CCT domain