PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G25500.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 478aa    MW: 50101.4 Da    PI: 4.6726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G25500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1653105155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ a+ Aa+a++aa+++l+g
  ONIVA08G25500.1  53 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 105
                      579******************9...6445*************************98 PP
2AP260.44.3e-19285337155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  ONIVA08G25500.1 285 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 337
                      579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1253105IPR001471AP2/ERF domain
SMARTSM003802.4E-1654120IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1554115IPR016177DNA-binding domain
PROSITE profilePS5103221.16754114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2554116IPR001471AP2/ERF domain
PfamPF008474.0E-14285337IPR001471AP2/ERF domain
PROSITE profilePS5103220.455286345IPR001471AP2/ERF domain
SMARTSM003803.6E-21286351IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-18286347IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-27286347IPR001471AP2/ERF domain
PRINTSPR003678.3E-5287298IPR001471AP2/ERF domain
CDDcd000182.98E-19299347No hitNo description
PRINTSPR003678.3E-5311327IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MCTSKLEEIT GEWPPPALQA ASTTSSSEPC RRLSPPSSKR PAGRTKFHET RHPVFRGVRR  60
RGRAGRWVCE VRVPGRRGCR LWLGTFDAAD AAARAHDAAM LALRGRAAAC LNFADSAWLL  120
AVPPPATLRC AADVQRAVAR ALEDFEQRES SSSVFPLAID VVAEDAMSAT SEPSAASDDD  180
AVTSSSSTTD ADEEASPFEL DVVSDMGWSL YYASLAEGLL MEPPASGASS DDDDDAIVDS  240
GDIADNTTAM GQLMSSSATT AATATGPSSP KRPAGRTKFQ ETRHPVFRGV RRRGRAGRWV  300
CEVRVPGSRG DRLWVGTFDT AEEAARAHDA AMLALCGASA SLNFADSAWL LHVPRAPVAS  360
GHDQLPDVQR AASEAVAEFQ RRGSTAATAT ATSGDAASTA PPSSSPVLSP NDDNASSAST  420
PAVAAALDHG DMFGGMRADL YYASLAQGLL IEPPSPPTTA EGFCDDEGCG GAEMELWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648963.11e-135dehydration-responsive element-binding protein 1I
SwissprotQ0J3Y61e-136DRE1I_ORYSJ; Dehydration-responsive element-binding protein 1I
TrEMBLA0A0E0IFD40.0A0A0E0IFD4_ORYNI; Uncharacterized protein
STRINGONIVA08G25500.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-20C-repeat/DRE binding factor 2